, including all inherited members.
AcceptCharge(int charge) | gcp::FragmentAtom | [virtual] |
AcceptNewBonds(int nb) | gcp::FragmentAtom | [virtual] |
AddAlias(TypeId id, std::string TypeName) | gcu::Object | [static] |
AddBond(gcu::Bond *pBond) | gcp::Atom | [virtual] |
AddChild(Object *object) | gcu::Object | [virtual] |
AddElectron(Electron *electron) | gcp::Atom | |
AddItem() | gcp::FragmentAtom | [virtual] |
AddMenuCallback(TypeId Id, BuildMenuCb cb) | gcu::Object | [static] |
AddRule(TypeId type1, RuleId rule, TypeId type2) | gcu::Object | [static] |
AddRule(const std::string &type1, RuleId rule, const std::string &type2) | gcu::Object | [static] |
AddToMolecule(Molecule *Mol) | gcp::FragmentAtom | [virtual] |
AddType(std::string TypeName, Object *(*CreateFunc)(), TypeId id=OtherType) | gcu::Object | [static] |
Atom() | gcp::Atom | |
Atom(int Z, double x, double y, double z) | gcp::Atom | |
Atom(OpenBabel::OBAtom *atom) | gcp::Atom | |
gcu::Atom::Atom(Atom &a) | gcu::Atom | |
Build(std::list< Object * > &Children) | gcu::Object | [virtual] |
BuildContextualMenu(GtkUIManager *UIManager, Object *object, double x, double y) | gcp::Atom | |
gcu::Atom::BuildContextualMenu(GtkUIManager *UIManager, Object *object, double x, double y) | gcu::Object | [virtual] |
BuildPropertiesDialog() | gcu::Object | [protected, virtual] |
BuildSymbolGeometry(double width, double height, double ascent) | gcp::Atom | [protected] |
Clear() | gcu::Object | [virtual] |
ClearDialogs() | gcu::DialogOwner | |
CreateNewSignalId() | gcu::Object | [static] |
CreateObject(const std::string &TypeName, Object *parent=NULL) | gcu::Object | [static] |
DialogOwner() | gcu::DialogOwner | |
Distance(Atom *pAtom) | gcu::Atom | |
DoBuildSymbolGeometry(View *pView) | gcp::FragmentAtom | |
EmitSignal(SignalId Signal) | gcu::Object | |
ForceChanged() | gcp::Atom | [inline] |
FragmentAtom() | gcp::FragmentAtom | |
FragmentAtom(Fragment *fragment, int Z) | gcp::FragmentAtom | |
FragmentResidue() | gcp::FragmentResidue | |
FragmentResidue(Fragment *fragment, char const *symbol) | gcp::FragmentResidue | |
GetAbbrev(void) const | gcp::FragmentResidue | [inline] |
GetAtomAt(double x, double y, double z=0.) | gcu::Object | [virtual] |
GetAttachedHydrogens() const | gcp::Atom | [inline] |
GetAvailablePosition(double &x, double &y) | gcp::FragmentAtom | [virtual] |
GetBestSide() | gcp::Atom | |
GetBond(Atom *pAtom) const | gcu::Atom | |
GetBondAtAngle(double angle) | gcp::Atom | |
GetBondsNumber() const | gcu::Atom | [inline] |
GetCharge() const | gcp::Atom | [inline] |
gcu::Atom::GetCharge() | gcu::Atom | [inline] |
GetChargeItem(void) | gcp::Atom | [inline] |
GetChargePosition(unsigned char &Pos, double Angle, double &x, double &y) | gcp::FragmentAtom | [virtual] |
gcp::Atom::GetChargePosition(double *Angle, double *Dist) const | gcp::Atom | |
GetChild(const gchar *Id) const | gcu::Object | |
GetChildrenNumber() const | gcu::Object | [inline] |
GetCoords(double *x, double *y, double *z=NULL) const | gcu::Atom | [virtual] |
GetCreationLabel(TypeId Id) | gcu::Object | [static] |
GetCreationLabel(const std::string &TypeName) | gcu::Object | [static] |
GetDescendant(const gchar *Id) const | gcu::Object | |
GetDialog(std::string name) | gcu::DialogOwner | |
GetDirty(void) const | gcu::Object | [inline] |
GetDocument() const | gcu::Object | |
GetFirstBond(std::map< Atom *, Bond * >::iterator &i) | gcu::Atom | |
GetFirstChild(std::map< std::string, Object * >::iterator &i) | gcu::Object | |
GetFirstLink(std::set< Object * >::iterator &i) | gcu::Object | |
GetFragment(void) const | gcp::FragmentAtom | [inline] |
GetGroup() const | gcu::Object | |
GetHPosStyle(void) const | gcp::Atom | [inline] |
GetId() const | gcu::Object | [inline] |
GetItem(void) | gccv::ItemClient | [inline] |
GetMolecule() const | gcu::Object | |
GetNextBond(std::map< Atom *, Bond * >::iterator &i) | gcu::Atom | |
GetNextChild(std::map< std::string, Object * >::iterator &i) | gcu::Object | |
GetNextLink(std::set< Object * >::iterator &i) | gcu::Object | |
GetNextNodeByName(xmlNodePtr node, char const *Name) | gcu::Object | |
GetNextNodeByProp(xmlNodePtr node, char const *Property, char const *Id) | gcu::Object | |
GetNodeByName(xmlNodePtr node, char const *Name) | gcu::Object | |
GetNodeByProp(xmlNodePtr node, char const *Property, char const *Id) | gcu::Object | |
GetParent() const | gcu::Object | [inline] |
GetParentOfType(TypeId Id) const | gcu::Object | |
GetPosition(double angle, double &x, double &y) | gcp::FragmentAtom | [virtual] |
GetPossibleAncestorTypes(std::set< TypeId > &types) const | gcu::Object | |
GetProperty(unsigned property) const | gcu::Atom | [virtual] |
GetReaction() const | gcu::Object | |
GetRefHPosStyle(void) | gcp::Atom | [inline] |
GetRefShowSymbol(void) | gcp::Atom | [inline] |
GetRelativePosition(double angle, double &x, double &y) | gcp::Atom | [virtual] |
GetResidue(void) const | gcp::FragmentResidue | [inline] |
GetRules(TypeId type, RuleId rule) | gcu::Object | [static] |
GetRules(const std::string &type, RuleId rule) | gcu::Object | [static] |
GetShowCharge(void) const | gcp::Atom | [inline] |
GetShowSymbol(void) const | gcp::Atom | [inline] |
GetSymbol() const | gcp::FragmentResidue | [virtual] |
GetSymbolGeometry(double &width, double &height, double &angle, bool up) const | gcp::Atom | |
GetTotalBondsNumber() const | gcp::Atom | |
GetType() const | gcu::Object | [inline] |
GetTypeId(const std::string &Name) | gcu::Object | [static] |
GetTypeName(TypeId Id) | gcu::Object | [static] |
GetVector() const | gcu::Atom | |
GetYAlign() | gcp::Atom | [virtual] |
GetZ() const | gcu::Atom | [inline] |
HasAvailableElectrons(bool paired) | gcp::Atom | |
HasChildren() const | gcu::Object | [inline] |
HasImplicitElectronPairs() | gcp::Atom | |
HasPropertiesDialog() const | gcu::Object | [virtual] |
Identity() | gcu::Object | |
IsInCycle(Cycle *pCycle) | gcu::Atom | |
IsLocked() | gcu::Object | [inline] |
ItemClient() | gccv::ItemClient | |
Link(Object *object) | gcu::Object | |
Load(xmlNodePtr node) | gcp::FragmentResidue | [virtual] |
LoadNode(xmlNodePtr node) | gcp::Atom | [virtual] |
Lock(bool state=true) | gcu::Object | |
m_Bonds | gcu::Atom | [protected] |
m_Charge | gcu::Atom | [protected] |
m_CHeight | gcp::Atom | [protected] |
m_Item | gccv::ItemClient | [protected] |
m_x | gcu::Atom | [protected] |
m_y | gcu::Atom | [protected] |
m_z | gcu::Atom | [protected] |
m_Z | gcu::Atom | [protected] |
Match(gcu::Atom *atom, gcu::AtomMatchState &state) | gcp::FragmentAtom | [virtual] |
MayHaveImplicitUnpairedElectrons() | gcp::Atom | |
Move(double x, double y, double z=0.) | gcu::Atom | [virtual] |
Name() | gcu::Atom | [virtual] |
NotifyPositionOccupation(unsigned char pos, bool occupied) | gcp::Atom | |
Object(TypeId Id=OtherType) | gcu::Object | |
OnLoaded() | gcu::Object | [virtual] |
OnSignal(SignalId Signal, Object *Child) | gcu::Object | [virtual] |
OnUnlink(Object *object) | gcu::Object | [virtual] |
operator=(Atom &a) | gcu::Atom | |
RemoveBond(gcu::Bond *pBond) | gcp::Atom | [virtual] |
RemoveElectron(Electron *electron) | gcp::Atom | |
Save(xmlDocPtr xml) const | gcp::FragmentResidue | [virtual] |
SaveChildren(xmlDocPtr xml, xmlNodePtr node) const | gcu::Object | |
SaveId(xmlNodePtr node) const | gcu::Object | |
SaveNode(xmlDocPtr xml, xmlNodePtr node) const | gcu::Atom | [virtual] |
SetCharge(int charge) | gcp::Atom | |
gcu::Atom::SetCharge(char Charge) | gcu::Atom | [inline, virtual] |
SetChargeItem(gccv::Item *val) | gcp::Atom | [inline] |
SetChargePosition(unsigned char Pos, bool def, double angle=0., double distance=0.) | gcp::Atom | |
SetCoords(double x, double y, double z=0) | gcu::Atom | [inline] |
SetCreationLabel(TypeId Id, std::string Label) | gcu::Object | [static] |
SetDirty(bool dirty=true) | gcu::Object | |
SetHPosStyle(HPos val) | gcp::Atom | [inline] |
SetId(gchar const *Id) | gcu::Object | |
SetParent(Object *Parent) | gcu::Object | |
SetProperty(unsigned property, char const *value) | gcu::Atom | [virtual] |
SetResidue(Residue const *res) | gcp::FragmentResidue | |
SetSelected(int state) | gcp::FragmentAtom | [virtual] |
SetShowCharge(bool val) | gcp::Atom | [inline] |
SetShowSymbol(bool val) | gcp::Atom | [inline] |
SetZ(int Z) | gcp::FragmentAtom | [virtual] |
ShowPropertiesDialog() | gcu::Object | |
Transform2D(gcu::Matrix2D &m, double x, double y) | gcp::Atom | [virtual] |
Unlink(Object *object) | gcu::Object | |
Update() | gcp::FragmentAtom | [virtual] |
UpdateItem() | gcp::FragmentAtom | [virtual] |
x() const | gcu::Atom | [inline] |
y() const | gcu::Atom | [inline] |
z() const | gcu::Atom | [inline] |
zoom(double ZoomFactor) | gcu::Atom | |
~Atom() | gcp::Atom | [virtual] |
~DialogOwner() | gcu::DialogOwner | [virtual] |
~FragmentAtom() | gcp::FragmentAtom | [virtual] |
~FragmentResidue() | gcp::FragmentResidue | [virtual] |
~ItemClient() | gccv::ItemClient | [virtual] |
~Object() | gcu::Object | [virtual] |